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Unifying heterogeneous and distributed information about marine species through the top level ontology MarineTLO

Yannis Tzitzikas (Institute of Computer Science, FORTH-ICS, Heraklion, Greece)
Carlo Allocca (Institute of Computer Science, FORTH-ICS, Heraklion, Greece)
Chryssoula Bekiari (Institute of Computer Science, FORTH-ICS, Heraklion, Greece)
Yannis Marketakis (Institute of Computer Science, FORTH-ICS, Heraklion, Greece)
Pavlos Fafalios (Institute of Computer Science, FORTH-ICS, Heraklion, Greece)
Martin Doerr (Institute of Computer Science, FORTH-ICS, Heraklion, Greece)
Nikos Minadakis (Institute of Computer Science, FORTH-ICS, Heraklion, Greece)
Theodore Patkos (Institute of Computer Science, FORTH-ICS, Heraklion, Greece)
Leonardo Candela (Consiglio Nazionale delle Ricerche, Pisa, Italy)

Program: electronic library and information systems

ISSN: 0033-0337

Article publication date: 1 February 2016

383

Abstract

Purpose

Marine species data are scattered across a series of heterogeneous repositories and information systems. There is no repository that can claim to have all marine species data. Moreover, information on marine species are made available through different formats and protocols. The purpose of this paper is to provide models and methods that allow integrating such information either for publishing it, browsing it or querying it. Aiming at providing a valid and reliable knowledge ground for enabling semantic interoperability of marine species data, in this paper the authors motivate a top level ontology, called MarineTLO and discuss its use for creating MarineTLO-based warehouses.

Design/methodology/approach

In this paper the authors introduce a set of motivating scenarios that highlight the need of having a top level ontology. Afterwards the authors describe the main data sources (Fisheries Linked Open Data, ECOSCOPE, WoRMS, FishBase and DBpedia) that will be used as a basis for constructing the MarineTLO.

Findings

The paper discusses about the exploitation of MarineTLO for the construction of a warehouse. Furthermore a series of uses of the MarineTLO-based warehouse is being reported.

Originality/value

In this paper the authors described the design of a top level ontology for the marine domain able to satisfy the need for maintaining integrated sets of facts about marine species and thus assisting ongoing research on biodiversity. Apart from the ontology the authors also elaborated with the mappings that are required for building integrated warehouses.

Keywords

Acknowledgements

This work was partially supported by the project iMarine (FP7 Research Infrastructures, 2011-2014) and the LifeWatch Greece project (National Strategic Reference Framework, 2012-2015), and the European Union and Greek national funds through the Operational Program “Education and Lifelong Learning” of the National Strategic Reference Framework (NSRF) – Research Funding Program (Thales, Investing in knowledge society through the European Social Fund).

Citation

Tzitzikas, Y., Allocca, C., Bekiari, C., Marketakis, Y., Fafalios, P., Doerr, M., Minadakis, N., Patkos, T. and Candela, L. (2016), "Unifying heterogeneous and distributed information about marine species through the top level ontology MarineTLO", Program: electronic library and information systems, Vol. 50 No. 1, pp. 16-40. https://doi.org/10.1108/PROG-10-2014-0072

Publisher

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Emerald Group Publishing Limited

Copyright © 2016, Emerald Group Publishing Limited

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